Imputed data
We have three sets of imputed data based on 1000 Genomes. Some are derived from single source data sets, others use a combination of data sets. These are outlined in the table below.
|
Study name |
Source data |
Imputed against |
N (after QC) |
Imputed SNP count |
|
|
Momoko |
T1DGC |
Infinium HumanHap 550K v3 |
1000 Genomes |
2578 |
39,295,336 |
|
WTCCC2 |
|
1000 Genomes |
2804 |
39,298,007 |
|
|
Davies |
T1DGC |
Infinium HumanHap 550K v3 |
1000 Genomes |
2592 |
27,449,243 |
|
WTCCC1 |
Affymetrix 500K |
1000 Genomes |
1436 |
27,449,243 |
|
|
WTCCC2 |
Affymetrix v6 |
1000 Genomes |
2992 |
27,449,243 |
|
|
GMM |
Combined |
|
1000 Genomes |
5874 |
504,606 |
Study papers
Momoko: http://doi.org/10.1038/ncomms9658
Davies: https://doi.org/10.1038/srep16509
GMM: https://doi.org/10.1093/hmg/ddv293